Generate a ggplot2 stacked barplot from a relative abundance table. — bar_plot • bubbler

Generate a ggplot2 stacked barplot from a relative abundance table.

Usage

bar_plot(
  rel_abund_tb,
  x_var = "sample_id",
  position = "stack",
  width = 1,
  color = NULL,
  true_line = FALSE,
  italics = FALSE,
  global_colours = NULL
)

Arguments

rel_abund_tb: A relative abundance table in tibble format.
x_var: The x variable for plotting.
position: "fill" or "stack", should the plotting area be filled in.
width: The width of the bar.
color: A variable to color bars by.
true_line: Logical, whether to show a true abundance line.
italics: Logical, whether to italicize taxon.
global_colours: The global colour scheme as a named vector.

Value

A ggplot object.

Examples

rel_abund_phy(physeq) %>% bar_plot()