Grab taxa table from a tsv file and format to tibble
taxa_data_tsv.RdGrab taxa table from a tsv file and format to tibble
Examples
fpath <- system.file("extdata/tsv", "taxa.tsv", package = "bubbler")
taxa_data_tsv(fpath)
#> # A tibble: 20 × 7
#> asv Domain Phylum Class Order Family Genus
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 ASV1 Bacteria Actinomycetota Actinobacteria Streptomyceta… Strep… Stre…
#> 2 ASV2 Bacteria Bacillota Bacilli Caryophanales Alicy… Alic…
#> 3 ASV3 Bacteria Bacillota Bacilli Caryophanales Staph… Stap…
#> 4 ASV4 Bacteria Pseudomonadota Gammaproteobacteria Alteromonadal… Alter… Mari…
#> 5 ASV5 Bacteria Pseudomonadota Gammaproteobacteria Pseudomonadal… Pseud… Pseu…
#> 6 ASV6 Bacteria Pseudomonadota Gammaproteobacteria Vibrionales Vibri… Alii…
#> 7 ASV7 Bacteria Bacteroidota Flavobacteriia Flavobacteria… Flavo… Psyc…
#> 8 ASV8 Bacteria Bacillota Bacilli Lactobacillal… Lacto… Lact…
#> 9 ASV9 Bacteria Pseudomonadota Alphaproteobacteria Rickettsiales Ricke… Rick…
#> 10 ASV10 Bacteria Pseudomonadota Gammaproteobacteria Pseudomonadal… Morax… Mora…
#> 11 ASV11 Bacteria Pseudomonadota Alphaproteobacteria Caulobacteral… Maric… Mari…
#> 12 ASV12 Bacteria Pseudomonadota Gammaproteobacteria Nevskiales Nevsk… Sini…
#> 13 ASV13 Bacteria Bacillota Bacilli Lactobacillal… Lacto… Comp…
#> 14 ASV14 Bacteria Bacteroidota Cytophagia Cytophagales Cyclo… Algo…
#> 15 ASV15 Bacteria Pseudomonadota Gammaproteobacteria Xanthomonadal… Xanth… Lyso…
#> 16 ASV16 Bacteria Bacillota Bacilli Caryophanales Bacil… Anae…
#> 17 ASV17 Bacteria Bacillota Clostridia Eubacteriales Clost… Clos…
#> 18 ASV18 Bacteria Pseudomonadota Gammaproteobacteria Enterobactera… Yersi… Serr…
#> 19 ASV19 Bacteria Pseudomonadota Alphaproteobacteria Rhodobacteral… Roseo… Rhod…
#> 20 ASV20 Bacteria Synergistota Synergistia Synergistales Dethi… Rari…